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Xuesong (Steve)
2018-08-28 00:49:54 -04:00
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commit 5f87995e25
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GEOS-CHEM SIMULATION v8-01-01: GEOS-5 1-month benchmark
------------------------+------------------------------------------------------
%%% SIMULATION MENU %%% :
Start YYYYMMDD, HHMMSS : 20060501 000000
End YYYYMMDD, HHMMSS : 20060516 000000
Run directory : ./
Input restart file : restart.geos5.YYYYMMDDhh
Make new restart file? : T
Output restart file(s) : restart.geos5.YYYYMMDDhh
Root data directory : /data/ctm/GEOS_4x5/
=> GCAP subdir : AGRID/YYYY/MM/
=> GEOS-3 subdir : GEOS_3/YYYY/MM/
=> GEOS-4 subdir : GEOS_4_v4/YYYY/MM/
=> GEOS-5 subdir : GEOS_5/YYYY/MM/
=> GEOS-FP subdir : GEOS_FP/YYYY/MM/
Dir w/ 1x1 emissions etc: /data/ctm/GEOS_1x1/
Temporary directory : TMP/
Unzip met fields? : F
Wait for met fields? : F
Use variable tropopause?: T
Global offsets I0, J0 : 0 0
------------------------+------------------------------------------------------
%%% TRACER MENU %%% :
Type of simulation : 3
Number of Tracers : 43
Tracer Entries -------> : TR# Name g/mole Tracer Members; () = emitted
Tracer #1 : 1 NOx 46.0 NO2 (NO) NO3 HNO2
Tracer #2 : 2 Ox 48.0 (O3) NO2 2NO3
Tracer #3 : 3 PAN 121.0
Tracer #4 : 4 CO 28.0 (CO)
Tracer #5 : 5 ALK4 12.0 (4C)
Tracer #6 : 6 ISOP 12.0 (5C)
Tracer #7 : 7 HNO3 63.0 (HNO3)
Tracer #8 : 8 H2O2 34.0
Tracer #9 : 9 ACET 12.0 (3C)
Tracer #10 : 10 MEK 12.0 (4C)
Tracer #11 : 11 ALD2 12.0 (2C)
Tracer #12 : 12 RCHO 58.0
Tracer #13 : 13 MVK 70.0
Tracer #14 : 14 MACR 70.0
Tracer #15 : 15 PMN 147.0
Tracer #16 : 16 PPN 135.0
Tracer #17 : 17 R4N2 119.0
Tracer #18 : 18 PRPE 12.0 (3C)
Tracer #19 : 19 C3H8 12.0 (3C)
Tracer #20 : 20 CH2O 30.0 (CH2O)
Tracer #21 : 21 C2H6 12.0 (2C)
Tracer #22 : 22 N2O5 105.0
Tracer #23 : 23 HNO4 79.0
Tracer #24 : 24 MP 48.0
Tracer #25 : 25 DMS 62.0
Tracer #26 : 26 SO2 64.0
Tracer #27 : 27 SO4 96.0
Tracer #28 : 28 SO4s 96.0
Tracer #29 : 29 MSA 96.0
Tracer #30 : 30 NH3 17.0
Tracer #31 : 31 NH4 18.0
Tracer #32 : 32 NIT 62.0
Tracer #33 : 33 NITs 62.0
Tracer #34 : 34 BCPI 12.0
Tracer #35 : 35 OCPI 12.0
Tracer #36 : 36 BCPO 12.0
Tracer #37 : 37 OCPO 12.0
Tracer #38 : 38 DST1 29.0
Tracer #39 : 39 DST2 29.0
Tracer #40 : 40 DST3 29.0
Tracer #41 : 41 DST4 29.0
Tracer #42 : 42 SALA 31.4
Tracer #43 : 43 SALC 31.4
------------------------+------------------------------------------------------
%%% TRANSPORT MENU %%% :
Turn on Transport : T
=> Use Flux Correction?: T
=> Fill Negative Values: T
=> IORD, JORD, KORD : 3 3 7
Transport Timestep [min]: 30
------------------------+------------------------------------------------------
%%% CONVECTION MENU %%% :
Turn on Cloud Conv? : T
Turn on PBL Mixing? : T
Convect Timestep (min) : 30
------------------------+------------------------------------------------------
%%% EMISSIONS MENU %%% :
Turn on emissions? : T
Emiss timestep (min) : 60
Include anthro emiss? : T
=> Scale to (1985-2005): -1
=> Use EMEP emissions? : T
=> Use BRAVO emissions?: T
=> Use EDGAR emissions?: T
=> Use STREETS emiss? : T
=> Use CAC emissions? : T
=> Use NEI2005 emiss? : T
=> Use NEI2008 emiss? : F
=> Use RETRO emiss? : T
=> Use RCP emiss? : F
RCP scenario ? : RCP60
RCP year ? : 2010
Use EPA/NEI99 (anth+bf)?: F
w/ ICARTT modif.? : F
w/ VISTAS NOx emis? : F
Include biofuel emiss? : T
Include biogenic emiss? : T
=> Use MEGAN inventory?: T
=> Use MEGAN for MONO? : T
Include biomass emiss? : T
=> Seasonal biomass? : F
=> Scaled to TOMSAI? : F
=> Use GFED2 biomass? :---
=> monthly GFED2? : T
=> 8-day GFED2? : F
=> 3-hr GFED2? : F
=> synoptic GFED2? : F
=> Use GFED3 biomass? :---
=> monthly GFED3? : F
=> daily GFED3? : F
=> 3-hr GFED3? : F
Individual NOx sources :---
=> Use aircraft NOx? : T
=> Use aircraft RCP? : F
=> Use lightning NOx : T
=> Scale glb flrate?: T
=> OTD reg redist? : F
=> OTD loc redist? : T
=> Use CTH param? : T
=> Use MFLUX param? : F
=> Use PRECON param?: F
=> Use soil NOx : T
Use SHIP emissions :---
=> global EDGAR ? : F
=> global ICOADS ? : T
=> global RCP ? : F
=> EMEP over EUROPE ? : T
=> ship SO2 Corbett ? : F
=> ship SO2 Arctas ? : T
Use COOKE BC/OC (N. Am.): T
Use AVHRR-derived LAI? : F
------------------------+------------------------------------------------------
%%% AEROSOL MENU %%% :
Online SULFATE AEROSOLS : T
Online CRYST/AQ AEROSOLS: F
Online CARBON AEROSOLS : T
Online 2dy ORG AEROSOLS : F
Online DUST AEROSOLS : T
=> Use DEAD emissions? : T
Online SEASALT AEROSOLS : T
-- SALA radius bin [um]: .01 0.5
-- SALC radius bin [um]: 0.5 8.0
Online dicarb. chem. : F
------------------------+------------------------------------------------------
%%% DEPOSITION MENU %%% :
Turn on Dry Deposition? : T
Turn on Wet Deposition? : T
------------------------+------------------------------------------------------
%%% CHEMISTRY MENU %%% :
Turn on Chemistry? : T
Chemistry Timestep [min]: 60
Use Embedded Chemistry? : F
-- IE0, JE0, IE1, JE1 : 0 0 0 0
Read and save CSPEC_FULL: F
turn on lin. strat chem?: F
Use LINOZ for strat Ox? : F
------------------------+------------------------------------------------------
%%% HTAP SIM MENU %%% :
Use HTAP v2 Emissions : F
Sector Scaling Factors :---
=> AIR : 1.0
=> SHIPS : 1.0
=> ENERGY : 1.0
=> INDUSTRY : 1.0
=> TRANSPORT : 1.0
=> RESIDENTIAL : 1.0
=> AGRICULTURE : 1.0
Species Scaling Factors :---
=> BC : 1.0
=> CO : 1.0
=> OC : 1.0
=> NH3 : 1.0
=> NOx : 1.0
=> SO2 : 1.0
=> VOCs : 1.0
Source Mask Regions :---
=> OCEANS : F
=> US + CANADA : F
=> EUROPE + TURKEY : F
=> SOUTH ASIA : F
=> EAST ASIA : F
=> SOUTH EAST ASIA : F
=> AUSTRALIA + NEW ZEL: F
=> NORTH AFRICA : F
=> SUB SAHARAN AFRICA : F
=> MIDDLE EAST : F
=> MEXICO + CARIBBEAN : F
=> SOUTH AMERICA : F
=> RUSSIA + UKRAINE : F
=> CENTRAL ASIA : F
=> ARTIC CIRCLE : F
=> ANTARCTIC : F
Receptor Mask :---
=> Use receptor mask ?: F
=> BALTIC SEA : F
=> NORTH ATLANTIC OCEA: F
=> SOUTH ATLANTIC OCEA: F
=> NORTH PACIFIC OCEAN: F
=> SOUTH PACIFIC OCEAN: F
=> INDIAN OCEAN : F
=> HUDSON BAY : F
=> MEDITERRANEAN SEA : F
=> BLACK AND CASPIAN S: F
=> NORTH EAST US : F
=> SOUTH EAST US : F
=> NORTH WEST US : F
=> SOUTH WEST US : F
=> EAST CANADA : F
=> W CANADA, ALASKA (U: F
=> NORTH WEST EUROPE : F
=> SOUTH WEST EUROPE : F
=> EASTERN EUROPE : F
=> GREECE, TURKEY, CYP: F
=> NORTH INDIA, NEPAL,: F
=> SOUTH INDIA, SRI LA: F
=> INDIAN HIMALAYA : F
=> NORTH EAST CHINA : F
=> SOUTH EAST CHINA : F
=> WEST CHINA, MONGOLI: F
=> NORTH ANS SOUTH KOR: F
=> JAPAN : F
=> CHINA, TIBET HIMALA: F
=> INDONESIA, MALAYSIA: F
=> THAILAND, VIETNAM, : F
=> PACIFIC : F
=> AUSTRALIA : F
=> NEW ZELAND : F
=> EGYPT : F
=> REST OF NORTH AFRIC: F
=> SAHEL : F
=> CONGO,GHANA, GUINEA: F
=> BURUNDI, KENYA, ETH: F
=> ANGOLA, MALAWI, SOU: F
=> LEBANON, ISRAEL, SY: F
=> OMAN, QUATAR, YEMEN: F
=> IRAN, IRAK : F
=> MEXICO : F
=> CENTRAL AMERICA : F
=> CARIBBEAN : F
=> COLOMBIA, VENEZUELA: F
=> SOUTH BRAZIL : F
=> REST OF BRAZIL : F
=> URUGUAY, PARAGUAY, : F
=> PERU, ECUADOR : F
=> RUSSIA WEST : F
=> RUSSIA EAST : F
=> BELORUSSIA + UKRAIN: F
=> CENTRAL ASIA : F
=> ARTIC CIRCLE, GREEN: F
=> ANTARCTIC : F
=> SOUTHERN OCEAN : F
------------------------+------------------------------------------------------
%%% OUTPUT MENU %%% : 123456789.123456789.123456789.1--1=ZERO+2=BPCH
Schedule output for JAN : 3030000000000003000000000000000
Schedule output for FEB : 30000000000000000000000000000
Schedule output for MAR : 3000000000000000000000000000000
Schedule output for APR : 300000000000000000000000000000
Schedule output for MAY : 3000000000000003000000000000003
Schedule output for JUN : 300000000000000300000000000300
Schedule output for JUL : 3003000000000003000000000000000
Schedule output for AUG : 3000000000000003000000000000000
Schedule output for SEP : 300000000000000000000000000000
Schedule output for OCT : 3000000000000000000000000000000
Schedule output for NOV : 300000000000000000000000000000
Schedule output for DEC : 3000000000000000000000000000000
------------------------+------------------------------------------------------
%%% GAMAP MENU %%% :
diaginfo.dat path : diaginfo.dat
tracerinfo.dat path : tracerinfo.dat
------------------------+------------------------------------------------------
%%% DIAGNOSTIC MENU %%% :
Binary punch file name : ctm.bpch
Diagnostic Entries ---> : L Tracers to print out for each diagnostic
ND01: Rn/Pb/Be source : 0 all
ND02: Rn/Pb/Be decay : 0 all
ND03: Hg emissions, P/L : 0 all
ND04: CO2 sources : 0 all
ND05: Sulfate prod/loss : 0 all
ND06: Dust aer source : 0 all
ND07: Carbon aer source : 0 all
ND08: Seasalt aer source: 0 all
ND09: - : 0 all
ND10: - : 0 all
ND11: Acetone sources : 0 all
ND12: BL fraction : 0 all
ND13: Sulfur sources : 0 all
ND14: Cld conv mass flx : 0 all
ND15: BL mix mass flx : 0 all
ND16: LS/Conv prec frac : 0 all
ND17: Rainout fraction : 0 all
ND18: Washout fraction : 0 all
ND19: - : 0 all
ND21: Optical depths : 0 all
ND22: J-Values : 0 1 7 8 20 99
=> JV time range : 11 13
ND24: E/W transpt flx : 0 all
ND25: N/S transpt flx : 0 all
ND26: U/D transpt flx : 0 all
ND27: Strat NOx,Ox,HNO3 : 0 1 2 7
ND28: Biomass emissions : 1 1 4 5 9 10 11 18 19 20 21 26 30 34 35
ND29: CO sources : 1 all
ND30: Land Map : 0 all
ND31: Surface pressure : 0 all
ND32: NOx sources : 1 all
ND33: Column tracer : 1 all
ND34: Biofuel emissions : 1 1 4 5 9 10 11 18 19 20 21 27
ND35: Tracers at 500 mb : 1 all
ND36: Anthro emissions : 1 all
ND37: Updraft scav frac : 0 all
ND38: Cld Conv scav loss: 0 all
ND39: Wetdep scav loss : 0 all
ND41: Afternoon PBL ht : 0 all
ND42: - : 0 all
ND43: Chem OH,NO,HO2,NO2: 47 all
==> OH/HO2 time range : 0 24
==> NO/NO2 time range : 10 14
ND44: Drydep flx/vel : 0 all
ND45: Tracer Conc's : 47 1 2 3 4 6 7 8 20
==> ND45 Time range : 0 24
ND46: Biogenic emissions: 1 all
ND47: 24-h avg trc conc : 47 1 2 4 6 20
ND52: - : 0 all
ND53: - : 0 all
ND54: Time in t'sphere : 0 all
ND55: Tropopause height : 0 all
ND56: - : 0 all
ND57: - : 0 all
ND58: - : 0 all
ND59: PM Tracers ug/m3 : 0 all
ND60: - : 0 all
ND61: - : 0 all
ND62: Inst column maps : 0 all
ND63: - : 0 all
ND64: - : 0 all
ND66: DAO 3-D fields : 47 all
ND67: DAO 2-D fields : 47 all
ND68: Airmass/Boxheight : 0 all
ND69: Surface area : 1 all
ND70: Debug output : 0 all
------------------------+------------------------------------------------------
%%% PLANEFLIGHT MENU %%%:
Turn on plane flt diag? : F
Flight track info file : Planeflight.dat.YYYYMMDD
Output file name : plane.log.YYYYMMDD
------------------------+------------------------------------------------------
%%% ND48 MENU %%% :
Turn on ND48 stations : F
Station Timeseries file : stations.YYYYMMDD
Frequency [min] : 60
Number of stations : 0
------------------------+------------------------------------------------------
%%% ND49 MENU %%% :
Turn on ND49 diagnostic : T
Inst 3-D timeser. file : ts.YYYYMMDD.bpch
Tracers to include : 89
Frequency [min] : 60
IMIN, IMAX of region : 1 72
JMIN, JMAX of region : 1 46
LMIN, LMAX of region : 1 47
-------------------------------------------------------------------------------
%%% ND50 MENU %%% :
Turn on ND50 diagnostic : F
24-hr avg timeser. file : ts_24h_avg.YYYYMMDD.bpch
Tracers to include : 82 83 84 85 86 87
IMIN, IMAX of region : 1 72
JMIN, JMAX of region : 1 46
LMIN, LMAX of region : 1 1
-------------------------------------------------------------------------------
%%% ND51 MENU %%% :
Turn on ND51 diagnostic : F
LT avg timeseries file : ts_satellite.YYYYMMDD.bpch
Tracers to include : 82 83 84 85 86 87
GMT Hour for disk write : 0
Avg Period [LT hours] : 10 14
IMIN, IMAX of region : 1 72
JMIN, JMAX of region : 1 46
LMIN, LMAX of region : 1 1
------------------------+------------------------------------------------------
%%% ND51b MENU %%% :
Turn on ND51 diagnostic : F
LT avg timeseries file : ts_satellite-2.YYYYMMDD.bpch
Tracers to include : 88
GMT Hour for disk write : 0
Avg Period [LT hours] : 10 14
IMIN, IMAX of region : 1 72
JMIN, JMAX of region : 1 46
LMIN, LMAX of region : 1 1
------------------------+------------------------------------------------------
%%% ND51c MENU %%% :
Turn on ND51 diagnostic : F
LT avg timeseries file : ts_satellite-3.YYYYMMDD.bpch
Tracers to include : 89
GMT Hour for disk write : 0
Avg Period [LT hours] : 10 14
IMIN, IMAX of region : 1 72
JMIN, JMAX of region : 1 46
LMIN, LMAX of region : 1 1
------------------------+------------------------------------------------------
%%% ND51d MENU %%% :
Turn on ND51 diagnostic : F
LT avg timeseries file : ts_satellite-4.YYYYMMDD.bpch
Tracers to include : 90
GMT Hour for disk write : 0
Avg Period [LT hours] : 10 14
IMIN, IMAX of region : 1 72
JMIN, JMAX of region : 1 46
LMIN, LMAX of region : 1 1
------------------------+------------------------------------------------------
%%% PROD & LOSS MENU %%%:
Turn on P/L (ND65) diag?: T
# of levels for ND65 : 47
Save O3 P/L (ND20)? : F
Number of P/L families : 4
1st chemical family : POX: O3 NO2 2NO3 PAN PMN PPN HNO4 3N2O5 HNO3
2nd chemical family : LOX: O3 NO2 2NO3 PAN PMN PPN HNO4 3N2O5 HNO3
3rd chemical family : PCO: CO
4th chemical family : LCO: CO
------------------------+------------------------------------------------------
%%% ARCHIVED OH MENU %%%:
Dir w/ archived OH files: /data/ctm/GEOS_MEAN/OHmerge/v5-07-08/
------------------------+------------------------------------------------------
%%% O3 P/L MENU %%% :
Dir w/ O3 P/L rate files: /data/ctm/GEOS_MEAN/O3_PROD_LOSS/2003.v6-01-05/
------------------------+------------------------------------------------------
%%% NESTED GRID MENU %%%:
Save TPCORE BC's : F
Input BCs at 2x2.5? : F
Over North America? : F
TPCORE NA BC directory : BC_4x5_NA/
Over Europe? : F
TPCORE EU BC directory : BC_2x25_EU/
Over China? : F
TPCORE CH BC directory : BC_2x25_CH/
Over Custom Region? : F
TPCORE BC directory : BC_4x5_NA/
BC timestep [min] : 180
LL box of BC region : 11 29
UR box of BC region : 25 41
1x1 offsets I0_W, J0_W : 6 6
------------------------+------------------------------------------------------
%%% BENCHMARK MENU %%% :
Save benchmark output? : F
File w/ initial Ox : Ox.mass.initial
File w/ final Ox : Ox.mass.final
------------------------+------------------------------------------------------
%%% UNIX CMDS MENU %%% :
Background symbol : &
Redirect symbol : >
Unix remove command : rm -f
Unix pathname separator : /
Unix wildcard character : *
Unix unzip command : gzip -dc
Zip file suffix : .gz
------------------------+------------------------------------------------------
END OF FILE :
------------------------+------------------------------------------------------