Add files via upload

code/objects.sh~

@@ -0,0 +1,157 @@
+#!/bin/bash
+
+INPUT_FOLDER=`cat INPUT_FOLDER`
+
+cp Objects.default Objects.mkl
+
+# Note this line gives an error but WORKS correctly
+if  [ -n $(grep ' => offdiagonal                : F' $INPUT_FOLDER/input.gcadj) ]; then
+
+find="geos_chem_adj_mod.o"
+replace="covariance_mod.o 	      \
+geos_chem_adj_mod.o"
+
+sed -e "s/$find/$replace/g" Objects.mkl > Objects.off-diag
+mv Objects.off-diag Objects.mkl
+fi
+
+# Note this line gives an error but WORKS correctly
+if  [ -n $(grep 'Compute BFGS inverse Hessian   : F' $INPUT_FOLDER/input.gcadj) ]; then
+
+find="inv_hessian_mod.o"
+
+replace="inv_hessian_mod.o             \
+inv_hessian_lbfgs_mod.o"
+
+sed -e "s/$find/$replace/g" Objects.mkl > Objects.lbfgs
+mv Objects.lbfgs Objects.mkl
+fi
+
+
+if [ $1 = "HDF" ]; then
+
+find="getifsun.o"
+replace="getifsun.o                    \
+gvchsq.o "
+
+sed -e "s/$find/$replace/g" Objects.mkl > output1
+
+find="input_mod.o"
+replace="input_mod.o            \
+He4IncludeModule.o            \
+He4ErrorModule.o              \
+He4GridModule.o               \
+He4SwathModule.o              \
+findinv.o                     \
+airsv5_mod.o                  \
+airs_co_obs_mod.o             \
+HdfIncludeModule.o            \
+HdfSdModule.o                 \
+HdfVdModule.o                 \
+mls_o3_obs_mod.o              \
+mls_hno3_obs_mod.o            \
+omi_no2_obs_mod.o             \
+omi_so2_obs_mod.o             \
+omi_ch2o_obs_mod.o            \
+osiris_no2_obs_mod.o          \
+interp.o                      \
+gaussj.o                      \
+iasi_co_obs_mod.o             \
+mopitt_obs_mod.o"
+
+sed -e "s/$find/$replace/g" output1 > output
+rm output1
+mv output Objects.mk
+fi
+
+if [ $1 = "SAT_NETCDF" ]; then
+
+find="rpmares_mod.o"
+replace="rpmares_mod.o                 \
+gosat_co2_mod.o               \
+tes_nh3_mod.o                 \
+tes_o3_mod.o                  \
+iasi_o3_obs_mod.o             \
+tes_o3_irk_mod.o"
+
+sed -e "s/$find/$replace/g" Objects.mkl > output1
+
+find="tes_ch4_mod.o"
+replace="tes_ch4_mod.o                 \
+scia_ch4_mod.o"
+
+sed -e "s/$find/$replace/g" output1 > output
+rm output1
+mv output Objects.mk
+fi
+
+if [ $1 = "LIDORT" ]; then
+
+find="population_mod.o"
+replace="population_mod.o              \
+mie_mod.o                     \
+lidort_mod.o"
+
+sed -e "s/$find/$replace/g" Objects.mkl > output
+mv output Objects.mk
+fi
+
+if [ $1 = "DEFAULT" ]; then
+mv Objects.mkl Objects.mk
+fi
+
+if [ $1 = "HDF_NETCDF" ]; then
+
+find="rpmares_mod.o"
+replace="rpmares_mod.o                 \
+gosat_co2_mod.o               \
+tes_nh3_mod.o                 \
+tes_o3_mod.o                  \
+iasi_o3_obs_mod.o             \
+tes_o3_irk_mod.o"
+
+sed -e "s/$find/$replace/g" Objects.mkl > output1
+
+find="tes_ch4_mod.o"
+replace="tes_ch4_mod.o                 \
+scia_ch4_mod.o"
+
+sed -e "s/$find/$replace/g" output1 > output2
+#rm output1
+#mv output Objects.mk
+
+find="getifsun.o"
+replace="getifsun.o                    \
+gvchsq.o "
+
+sed -e "s/$find/$replace/g" output2 > output3
+
+find="input_mod.o"
+replace="input_mod.o            \
+He4IncludeModule.o            \
+He4ErrorModule.o              \
+He4GridModule.o               \
+He4SwathModule.o              \
+findinv.o                     \
+airsv5_mod.o                  \
+airs_co_obs_mod.o             \
+HdfIncludeModule.o            \
+HdfSdModule.o                 \
+HdfVdModule.o                 \
+mls_o3_obs_mod.o              \
+mls_hno3_obs_mod.o            \
+omi_no2_obs_mod.o             \
+oni_so2_obs_mod.o             \
+omi_ch2o_obs_mod.o            \
+osiris_no2_obs_mod.o          \
+interp.o                      \
+gaussj.o                      \
+iasi_co_obs_mod.o             \
+mopitt_obs_mod.o"
+
+sed -e "s/$find/$replace/g" output3 > output
+rm output1
+rm output2
+rm output3
+mv output Objects.mk
+fi